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  5. Aop_g10954

Aop_g10954


Description : component *(SPT20/ADA5) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002206 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g10954
Cluster HCCA: Cluster_301

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00266960 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Als_g02622 No alias component *(SPT20/ADA5) of SAGA transcription... 0.04 OrthoFinder output from all 47 species
LOC_Os01g02860.1 LOC_Os01g02860 component SPT20/ADA5 of SAGA transcription co-activator complex 0.01 OrthoFinder output from all 47 species
Lfl_g07703 No alias component *(SPT20/ADA5) of SAGA transcription... 0.05 OrthoFinder output from all 47 species
Mp2g19910.1 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Ore_g37205 No alias component *(SPT20/ADA5) of SAGA transcription... 0.03 OrthoFinder output from all 47 species
Sam_g07983 No alias component *(SPT20/ADA5) of SAGA transcription... 0.05 OrthoFinder output from all 47 species
Spa_g14369 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR046467 PHL_dom 558 715
IPR046468 Spt20-like_SEP 29 182
No external refs found!