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  5. Aop_g10939

Aop_g10939 (CMT3)


Aliases : CMT3

Description : DNA chromomethylase *(CMT) & original description: none


Gene families : OG0002093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002093_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g10939
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00193220 CMT3,... Chromatin organisation.DNA methylation.RNA-independent... 0.1 OrthoFinder output from all 47 species
AMTR_s00048p00181490 CMT2,... Chromatin organisation.DNA methylation.RNA-independent... 0.03 OrthoFinder output from all 47 species
Adi_g014234 CMT2 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Adi_g060185 CMT3 DNA chromomethylase *(CMT) & original description: none 0.09 OrthoFinder output from all 47 species
Adi_g089629 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ala_g07783 CMT3 DNA chromomethylase *(CMT) & original description: none 0.12 OrthoFinder output from all 47 species
Als_g09491 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30424 CMT3 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g28229 CMT2 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20769.t1 CMT3, Aspi01Gene20769 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43679.t1 CMT3, Aspi01Gene43679 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Azfi_s0028.g023875 CMT3 DNA chromomethylase *(CMT) & original description: CDS=5-2743 0.04 OrthoFinder output from all 47 species
Cba_g10809 CMT3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G007000.1 CMT3, Ceric.12G007000 DNA chromomethylase *(CMT) & original description:... 0.17 OrthoFinder output from all 47 species
Ceric.34G031800.1 CMT3, Ceric.34G031800 DNA chromomethylase *(CMT) & original description:... 0.06 OrthoFinder output from all 47 species
Cre03.g202150 No alias Putative DNA (cytosine-5)-methyltransferase CMT1... 0.02 OrthoFinder output from all 47 species
Dac_g12073 CMT3 DNA chromomethylase *(CMT) & original description: none 0.21 OrthoFinder output from all 47 species
Dcu_g46826 CMT3 DNA chromomethylase *(CMT) & original description: none 0.13 OrthoFinder output from all 47 species
Dcu_g50047 CMT2 DNA chromomethylase *(CMT) & original description: none 0.15 OrthoFinder output from all 47 species
Dde_g25407 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01025386001 CMT3 Chromatin organisation.DNA methylation.RNA-independent... 0.16 OrthoFinder output from all 47 species
GSVIVT01033464001 CMT1, DMT4 Chromatin organisation.DNA methylation.RNA-independent... 0.14 OrthoFinder output from all 47 species
Gb_13672 CMT3 DNA chromomethylase (CMT) 0.11 OrthoFinder output from all 47 species
LOC_Os10g01570.1 CMT3, LOC_Os10g01570 DNA chromomethylase (CMT) 0.12 OrthoFinder output from all 47 species
Len_g07756 CMT3 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g24159 CMT3 DNA chromomethylase *(CMT) & original description: none 0.1 OrthoFinder output from all 47 species
Lfl_g18656 CMT2 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
MA_173651g0010 CMT3 DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa... 0.13 OrthoFinder output from all 47 species
Mp6g08650.1 CMT3 DNA chromomethylase (CMT) 0.07 OrthoFinder output from all 47 species
Msp_g14579 CMT3 DNA chromomethylase *(CMT) & original description: none 0.1 OrthoFinder output from all 47 species
Nbi_g39436 CMT3 DNA chromomethylase *(CMT) & original description: none 0.19 OrthoFinder output from all 47 species
Ppi_g62076 CMT3 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0222.g026232 CMT3 DNA chromomethylase *(CMT) & original description: CDS=250-2766 0.1 OrthoFinder output from all 47 species
Solyc01g006100.4.1 CMT3, Solyc01g006100 DNA chromomethylase (CMT) 0.08 OrthoFinder output from all 47 species
Solyc12g100330.2.1 CMT3, Solyc12g100330 DNA chromomethylase (CMT) 0.11 OrthoFinder output from all 47 species
Spa_g08555 CMT3 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g26095 CMT3 DNA chromomethylase *(CMT) & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g52855 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07640 CMT3 DNA chromomethylase *(CMT) & original description: none 0.12 OrthoFinder output from all 47 species
Tin_g10202 CMT3 DNA chromomethylase *(CMT) & original description: none 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001025 BAH_dom 171 285
IPR001525 C5_MeTfrase 510 870
IPR023780 Chromo_domain 446 499
No external refs found!