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  5. Aop_g10889

Aop_g10889 (PTAC3)


Aliases : PTAC3

Description : cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3) & original description: none


Gene families : OG0004426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004426_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Aop_g10889
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AT3G04260 PTAC3 plastid transcriptionally active 3 0.06 OrthoFinder output from all 47 species
Adi_g020728 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.05 OrthoFinder output from all 47 species
Als_g09362 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.02 OrthoFinder output from all 47 species
Cba_g34156 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Dde_g09087 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Ehy_g16824 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.05 OrthoFinder output from all 47 species
GSVIVT01026351001 PTAC3 RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 OrthoFinder output from all 47 species
LOC_Os10g32540.1 PTAC3, LOC_Os10g32540 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Len_g01904 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.08 OrthoFinder output from all 47 species
Lfl_g12563 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.04 OrthoFinder output from all 47 species
MA_10433475g0010 PTAC3 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Mp2g04680.1 PTAC3 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Msp_g16208 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014299 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Smo164431 PTAC3 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Solyc04g050540.4.1 PTAC3, Solyc04g050540 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR003034 SAP_dom 658 689
No external refs found!