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  5. Aop_g10465

Aop_g10465


Description : component *(eL8) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001502 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001502_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g10465

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00218360 evm_27.TU.AmTr_v1... 60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica 0.07 OrthoFinder output from all 47 species
AMTR_s00047p00140090 evm_27.TU.AmTr_v1... 60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica 0.06 OrthoFinder output from all 47 species
AMTR_s00047p00140240 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
AT2G47610 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.11 OrthoFinder output from all 47 species
AT3G62870 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.12 OrthoFinder output from all 47 species
Adi_g005572 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g007366 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g00994 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g38500 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aspi01Gene23106.t1 Aspi01Gene23106 component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene25478.t1 Aspi01Gene25478 component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0102.g044550 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Azfi_s0148.g053103 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g07504 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g10534 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g10535 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g46928 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Ceric.08G064100.1 Ceric.08G064100 component *(eL8) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.28G063900.1 Ceric.28G063900 component *(eL8) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000128.22 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Cre12.g529651 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Dac_g12130 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dac_g12131 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g03427 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g30506 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g04422 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g17204 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01008585001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
GSVIVT01033050001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
GSVIVT01036540001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Gb_36761 No alias component RPL7a of LSU proteome component 0.1 OrthoFinder output from all 47 species
Gb_36922 No alias component RPL7a of LSU proteome component 0.04 OrthoFinder output from all 47 species
LOC_Os08g23710.1 LOC_Os08g23710 component RPL7a of LSU proteome component 0.08 OrthoFinder output from all 47 species
LOC_Os09g32976.1 LOC_Os09g32976 component RPL7a of LSU proteome component 0.09 OrthoFinder output from all 47 species
Len_g06165 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Len_g31217 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Lfl_g25988 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_109678g0010 No alias component RPL7a of LSU proteome component 0.09 OrthoFinder output from all 47 species
Mp2g23250.1 No alias component RPL7a of LSU proteome component 0.07 OrthoFinder output from all 47 species
Mp8g17650.1 No alias component RPL7a of LSU proteome component 0.08 OrthoFinder output from all 47 species
Msp_g01446 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Nbi_g10842 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g02760 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g59570 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c26_330V3.1 Pp3c26_330 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 OrthoFinder output from all 47 species
Pp3c9_380V3.1 Pp3c9_380 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 OrthoFinder output from all 47 species
Ppi_g16513 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g26716 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013775 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g06600 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g09914 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g17532 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g28791 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g28887 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Smo270545 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Solyc01g097760.3.1 Solyc01g097760 component RPL7a of LSU proteome component 0.02 OrthoFinder output from all 47 species
Solyc06g050120.3.1 Solyc06g050120 component RPL7a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Spa_g10426 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Spa_g48863 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g40004 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Zm00001e010129_P001 Zm00001e010129 component RPL7a of LSU proteome component 0.12 OrthoFinder output from all 47 species
Zm00001e034633_P002 Zm00001e034633 component RPL7a of LSU proteome component 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 120 208
No external refs found!