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  5. Aop_g09578

Aop_g09578


Description : RNA chaperone (CSP) of mRNA quality control & original description: none


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g09578
Cluster HCCA: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
Ala_g10948 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Ceric.39G049600.1 GRP2B, ATGRP2B,... cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Len_g09990 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Pnu_g20696 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Sam_g06106 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Sam_g26933 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Solyc01g111300.4.1 GRP2B, ATGRP2B,... RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 OrthoFinder output from all 47 species
Tin_g19963 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!