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  5. Aop_g09035

Aop_g09035 (CHR20, ATRX)


Aliases : CHR20, ATRX

Description : chromatin remodeling factor *(ATRX) & original description: none


Gene families : OG0003866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003866_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g09035

Target Alias Description ECC score Gene Family Method Actions
Adi_g021727 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g21446 CHR20, ATRX not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g16593 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g13390 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14539.t1 CHR20, ATRX,... chromatin remodeling factor *(ATRX) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000339.26 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.24 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.26 CHR20, ATRX Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01023393001 CHR20, ATRX Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Gb_33142 CHR20, ATRX chromatin remodeling factor (ATRX) 0.03 OrthoFinder output from all 47 species
Mp5g21000.1 CHR20, ATRX chromatin remodeling factor (ATRX) 0.02 OrthoFinder output from all 47 species
Sam_g08109 No alias chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species
Smo441095 CHR20, ATRX Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Solyc04g050160.4.1 CHR20, ATRX,... Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 1213 1338
IPR000330 SNF2_N 813 1131
IPR041430 ADD_ATRX 582 629
No external refs found!