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  5. Aop_g08592

Aop_g08592 (PTB2, ATPTB2)


Aliases : PTB2, ATPTB2

Description : RNA splicing factor *(PTB) & original description: none


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Aop_g08592

Target Alias Description ECC score Gene Family Method Actions
Cba_g24087 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44883 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g25980.2 PTB1, PTB,... PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
Pir_g12473 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g007320.4.1 PTB2, ATPTB2,... PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 23 73
IPR021790 PTBP1-like_RRM2 244 321
No external refs found!