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  5. Aop_g08555

Aop_g08555 (CHB4, SWI3C, ATSWI3C)


Aliases : CHB4, SWI3C, ATSWI3C

Description : SMARCC component *(SWI3) of chromatin remodeling complex & original description: none


Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g08555
Cluster HCCA: Cluster_328

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00072490 CHB3, ATSWI3D,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
AT1G21700 CHB4, SWI3C, ATSWI3C SWITCH/sucrose nonfermenting 3C 0.03 OrthoFinder output from all 47 species
AT4G34430 CHB3, ATSWI3D DNA-binding family protein 0.05 OrthoFinder output from all 47 species
Adi_g055176 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Ala_g02056 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.05 OrthoFinder output from all 47 species
Azfi_s0099.g044199 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Cba_g15169 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Ceric.03G090000.1 CHB4, SWI3C,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.07 OrthoFinder output from all 47 species
Ceric.17G074300.1 CHB3, ATSWI3D,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.05 OrthoFinder output from all 47 species
Ceric.22G071000.1 CHB3, ATSWI3D,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ceric.28G011200.1 CHB2, SWI3B,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Cre08.g364050 CHB3, ATSWI3D Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dac_g10520 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Dac_g29366 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Dde_g00898 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ehy_g09982 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
GSVIVT01008584001 SWI3A, CHB1, ATSWI3A Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
GSVIVT01008831001 CHB4, SWI3C, ATSWI3C Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
GSVIVT01031951001 CHB3, ATSWI3D Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Gb_22023 CHB2, SWI3B, ATSWI3B component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
LOC_Os04g40420.1 SWI3A, CHB1,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
LOC_Os12g07730.1 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.04 OrthoFinder output from all 47 species
Len_g07560 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.05 OrthoFinder output from all 47 species
Len_g14234 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.07 OrthoFinder output from all 47 species
MA_10426514g0020 CHB4, SWI3C, ATSWI3C component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
MA_10426836g0010 SWI3A, CHB1, ATSWI3A component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
MA_10432371g0010 CHB3, ATSWI3D component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Mp8g15610.1 SWI3A, CHB1, ATSWI3A component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Msp_g26887 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Pir_g47942 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Pnu_g13567 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Ppi_g01335 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0127.g021843 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Sam_g52721 No alias SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Solyc01g109510.3.1 CHB3, ATSWI3D,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Solyc04g082760.3.1 CHB2, SWI3B,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Solyc06g060120.3.1 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Spa_g14657 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Spa_g30642 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.06 OrthoFinder output from all 47 species
Tin_g21307 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromaTin remodeling complex... 0.03 OrthoFinder output from all 47 species
Zm00001e012143_P002 CHB3, ATSWI3D,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Zm00001e024548_P001 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032451 SMARCC_C 677 753
IPR001005 SANT/Myb 463 503
IPR007526 SWIRM 232 317
No external refs found!