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  5. Aop_g07970

Aop_g07970


Description : not classified & original description: none


Gene families : OG0001145 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001145_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g07970

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00189420 evm_27.TU.AmTr_v1... Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT5G62440 No alias Protein of unknown function (DUF3223) 0.03 OrthoFinder output from all 47 species
Aob_g08286 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.24G080300.1 Ceric.24G080300 not classified & original description: pacid=50628596... 0.03 OrthoFinder output from all 47 species
Dac_g27812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g00538 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007999001 No alias Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
LOC_Os09g38268.1 LOC_Os09g38268 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Len_g09679 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo404272 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc04g078480.3.1 Solyc04g078480 Protein DCL, chloroplastic OS=Solanum lycopersicum... 0.02 OrthoFinder output from all 47 species
Solyc06g069770.3.1 Solyc06g069770 Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Tin_g08155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e038843_P001 Zm00001e038843 Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!