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  5. Aop_g07564

Aop_g07564


Description : not classified & original description: none


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g07564

Target Alias Description ECC score Gene Family Method Actions
Ceric.03G099000.1 Ceric.03G099000 not classified & original description: pacid=50572632... 0.03 OrthoFinder output from all 47 species
LOC_Os01g43120.1 LOC_Os01g43120 DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
LOC_Os02g57980.1 LOC_Os02g57980 DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Len_g51004 ATRH25, STRS2 mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g07730.1 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Ore_g45472 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15565 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g095740.4.1 Solyc01g095740 DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e037076_P003 Zm00001e037076 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 85 258
IPR001650 Helicase_C 309 410
No external refs found!