Aop_g07404 (ATCUL3A, ATCUL3, CUL3A, CUL3)

Aliases : ATCUL3A, ATCUL3, CUL3A, CUL3

Description : scaffold component *(CUL3) of CUL3-BTB E3 ligase complexes & original description: none

Gene families : OG0000920 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000920_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g07404
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AT5G46210	ATCUL4, CUL4	cullin4	0.03	OrthoFinder output from all 47 species
Aev_g15218	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.03	OrthoFinder output from all 47 species
Aob_g08433	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Azfi_s0005.g008901	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.03	OrthoFinder output from all 47 species
Azfi_s0233.g059433	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.04	OrthoFinder output from all 47 species
Cba_g13529	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.03	OrthoFinder output from all 47 species
Ceric.05G009200.1	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.04	OrthoFinder output from all 47 species
Ceric.06G089900.1	ATCUL4, CUL4,...	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.04	OrthoFinder output from all 47 species
Dcu_g13417	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.04	OrthoFinder output from all 47 species
Ehy_g02888	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.03	OrthoFinder output from all 47 species
GSVIVT01020008001	ATCUL3A, ATCUL3,...	Cullin-3A OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
LOC_Os03g57290.1	ATCUL4, CUL4,...	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Lfl_g02234	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.03	OrthoFinder output from all 47 species
MA_36374g0010	ATCUL4, CUL4	Cullin-4 OS=Arabidopsis thaliana (sp\|q8lgh4\|cul4_arath : 352.0)	0.02	OrthoFinder output from all 47 species
Mp1g07340.1	ATCUL4, CUL4	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.01	OrthoFinder output from all 47 species
Nbi_g03147	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Ore_g17472	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.05	OrthoFinder output from all 47 species
Pir_g01368	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Pir_g01666	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.03	OrthoFinder output from all 47 species
Pir_g14749	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.03	OrthoFinder output from all 47 species
Pnu_g10511	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Sam_g09683	No alias	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Sam_g13649	No alias	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Smo172620	ATCUL4, CUL4	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Tin_g01191	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquiTination...	0.03	OrthoFinder output from all 47 species
Zm00001e005919_P001	ATCUL4, CUL4,...	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019559	Cullin_neddylation_domain	664	726
IPR001373	Cullin_N	29	632

External Links

No external refs found!

Aop_g07404 (ATCUL3A, ATCUL3, CUL3A, CUL3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation