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Aliases : PTAC10, PDE312
Description : cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10) & original description: none
Gene families : OG0006411 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006411_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aop_g07043 | |
| Cluster | HCCA: Cluster_51 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00005p00203240 | PTAC10, PDE312,... | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00354p00009120 | PTAC10, PDE312,... | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.03 | OrthoFinder output from all 47 species | |
| AT3G48500 | PTAC10, PDE312 | Nucleic acid-binding, OB-fold-like protein | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g04661 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.02G035300.1 | PTAC10, PDE312,... | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g13818 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008490001 | PTAC10, PDE312 | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g67570.1 | PTAC10, PDE312,... | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
| MA_10428299g0010 | PTAC10, PDE312 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| MA_10435142g0010 | PTAC10, PDE312 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| MA_14025g0020 | PTAC10, PDE312 | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.04 | OrthoFinder output from all 47 species | |
| Mp4g08250.1 | PTAC10, PDE312 | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g00670 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g28130 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g15554 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g15491 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.08 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0069.g016617 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g49470 | No alias | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g12662 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g09197 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e028549_P001 | PTAC10, PDE312,... | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000145 | exocyst | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| MF | GO:0005543 | phospholipid binding | IEP | HCCA |
| MF | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006298 | mismatch repair | IEP | HCCA |
| BP | GO:0006887 | exocytosis | IEP | HCCA |
| BP | GO:0006950 | response to stress | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
| MF | GO:0008289 | lipid binding | IEP | HCCA |
| BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0032940 | secretion by cell | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0046903 | secretion | IEP | HCCA |
| BP | GO:0050896 | response to stimulus | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| CC | GO:0099023 | vesicle tethering complex | IEP | HCCA |
| BP | GO:0140352 | export from cell | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:1901981 | phosphatidylinositol phosphate binding | IEP | HCCA |
| MF | GO:1902936 | phosphatidylinositol bisphosphate binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |