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  5. Aop_g06998

Aop_g06998


Description : substrate adaptor *(RAE1) of SCF E3 ubiquitin ligase complex & original description: none


Gene families : OG0002069 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002069_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g06998

Target Alias Description ECC score Gene Family Method Actions
AT5G27920 No alias F-box family protein 0.04 OrthoFinder output from all 47 species
Ehy_g01378 No alias substrate adaptor *(RAE1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020583 No alias substrate adaptor *(RAE1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Smo437235 No alias F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Tin_g13447 No alias substrate adaptor *(RAE1) of SCF E3 ubiquiTin ligase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000782 telomere cap complex IEP HCCA
CC GO:0000783 nuclear telomere cap complex IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004476 mannose-6-phosphate isomerase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990879 CST complex IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 377 400
IPR001611 Leu-rich_rpt 541 561
IPR001611 Leu-rich_rpt 149 172
IPR001611 Leu-rich_rpt 618 640
IPR001611 Leu-rich_rpt 97 117
IPR001611 Leu-rich_rpt 277 298
IPR001611 Leu-rich_rpt 488 512
IPR001611 Leu-rich_rpt 351 372
IPR001611 Leu-rich_rpt 200 223
IPR001611 Leu-rich_rpt 229 248
No external refs found!