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  5. Aop_g06625

Aop_g06625


Description : not classified & original description: none


Gene families : OG0016822 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0016822_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g06625

Target Alias Description ECC score Gene Family Method Actions
Spa_g48620 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 414 455
IPR002885 Pentatricopeptide_repeat 717 763
IPR002885 Pentatricopeptide_repeat 616 663
IPR002885 Pentatricopeptide_repeat 515 561
IPR002885 Pentatricopeptide_repeat 212 258
IPR002885 Pentatricopeptide_repeat 315 345
IPR002885 Pentatricopeptide_repeat 792 818
IPR002885 Pentatricopeptide_repeat 287 308
IPR002885 Pentatricopeptide_repeat 489 511
No external refs found!