Aliases : NAF1, ATNAF1
Description : non-core component *(NAF1) of H/ACA snoRNP RNA pseudouridylation complex & original description: none
Gene families : OG0004285 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004285_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Aop_g06159 | |
Cluster | HCCA: Cluster_283 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Aev_g12784 | NAF1, ATNAF1 | non-core component *(NAF1) of H/ACA snoRNP RNA... | 0.03 | OrthoFinder output from all 47 species | |
Als_g21824 | NAF1, ATNAF1 | non-core component *(NAF1) of H/ACA snoRNP RNA... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.04G032200.1 | NAF1, ATNAF1,... | non-core component *(NAF1) of H/ACA snoRNP RNA... | 0.04 | OrthoFinder output from all 47 species | |
Dac_g33434 | NAF1, ATNAF1 | non-core component *(NAF1) of H/ACA snoRNP RNA... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g26558 | NAF1, ATNAF1 | non-core component *(NAF1) of H/ACA snoRNP RNA... | 0.02 | OrthoFinder output from all 47 species | |
Gb_27768 | NAF1, ATNAF1 | non-core component Nhp2/Naf1 of H/ACA small nucleolar... | 0.03 | OrthoFinder output from all 47 species | |
MA_127987g0010 | NAF1, ATNAF1 | non-core component Nhp2/Naf1 of H/ACA small nucleolar... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g11615 | No alias | non-core component *(NAF1) of H/ACA snoRNP RNA... | 0.02 | OrthoFinder output from all 47 species | |
Solyc07g054460.4.1 | NAF1, ATNAF1,... | non-core component Nhp2/Naf1 of H/ACA small nucleolar... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e032062_P001 | NAF1, ATNAF1,... | non-core component Nhp2/Naf1 of H/ACA small nucleolar... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
BP | GO:0042254 | ribosome biogenesis | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003682 | chromatin binding | IEP | HCCA |
MF | GO:0003689 | DNA clamp loader activity | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005663 | DNA replication factor C complex | IEP | HCCA |
BP | GO:0006260 | DNA replication | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0009143 | nucleoside triphosphate catabolic process | IEP | HCCA |
MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
MF | GO:0019843 | rRNA binding | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
BP | GO:0046434 | organophosphate catabolic process | IEP | HCCA |
BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
MF | GO:0047429 | nucleoside triphosphate diphosphatase activity | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901292 | nucleoside phosphate catabolic process | IEP | HCCA |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007504 | H/ACA_rnp_Gar1/Naf1 | 362 | 446 |
No external refs found! |