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  5. Aop_g05600

Aop_g05600 (VPS9, ATVPS9A, VPS9A)


Aliases : VPS9, ATVPS9A, VPS9A

Description : RAB5 nucleotide exchange factor *(VPS9) & original description: none


Gene families : OG0004643 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g05600
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Ceric.04G053400.1 VPS9, ATVPS9A,... RAB5 nucleotide exchange factor *(VPS9) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g06324 VPS9, ATVPS9A, VPS9A RAB5 nucleotide exchange factor *(VPS9) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01037118001 VPS9, ATVPS9A, VPS9A Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041545 DUF5601 23 87
IPR003123 VPS9 134 233
No external refs found!