Aop_g05302 (emb1354, CDC48C)

Aliases : emb1354, CDC48C

Description : platform ATPase CDC48 & original description: none

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g05302
Cluster	HCCA: Cluster_317

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00117380	evm_27.TU.AmTr_v1...	Cell division control protein 48 homolog D...	0.03	OrthoFinder output from all 47 species
AT3G01610	emb1354, CDC48C	cell division cycle 48C	0.02	OrthoFinder output from all 47 species
AT3G56690	CIP111	Cam interacting protein 111	0.04	OrthoFinder output from all 47 species
Adi_g035605	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g054679	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04868	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Als_g19975	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Als_g38557	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g22418	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g77518	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.16G061700.1	emb1354, CDC48C,...	platform ATPase CDC48 & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021463.10	No alias	Cell division control protein 48 homolog D...	0.02	OrthoFinder output from all 47 species
Dac_g09762	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g03992	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09095	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09970	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os06g01980.1	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.02	OrthoFinder output from all 47 species
LOC_Os11g11340.1	CIP111, LOC_Os11g11340	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Lfl_g33871	CIP111	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g12350.1	emb1354, CDC48C	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Nbi_g36367	CIP111	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19173	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g40907	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g13004	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g13016	CIP111	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g13901	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g51289	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo173081	CDC48B	Cell division control protein 48 homolog B...	0.02	OrthoFinder output from all 47 species
Solyc06g074980.3.1	Solyc06g074980	platform ATPase (CDC48)	0.03	OrthoFinder output from all 47 species
Spa_g04738	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e021405_P001	CIP111, Zm00001e021405	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e036688_P001	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.02	OrthoFinder output from all 47 species
Zm00001e041158_P001	CDC48B, Zm00001e041158	Cell division control protein 48 homolog B...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0032182	ubiquitin-like protein binding	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
MF	GO:0043130	ubiquitin binding	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	877	919
IPR041569	AAA_lid_3	557	591
IPR031996	NVL2_nucleolin-bd	15	75
IPR003959	ATPase_AAA_core	726	854
IPR003959	ATPase_AAA_core	386	532

External Links

No external refs found!

Aop_g05302 (emb1354, CDC48C)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation