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  5. Aop_g05243

Aop_g05243 (CDT1, ATCDT1A, CDT1A)


Aliases : CDT1, ATCDT1A, CDT1A

Description : helicase auxiliary factor *(CDT1) & original description: none


Gene families : OG0007109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g05243
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00171p00068790 CDT1, ATCDT1A,... Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.16 OrthoFinder output from all 47 species
AT2G31270 CDT1, ATCDT1A, CDT1A homolog of yeast CDT1 A 0.04 OrthoFinder output from all 47 species
AT3G54710 CDT1B, CDT1, ATCDT1B homolog of yeast CDT1 B homolog of yeast CDT1 B 0.03 OrthoFinder output from all 47 species
Aspi01Gene66565.t1 CDT1, ATCDT1A,... helicase auxiliary factor *(CDT1) & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.1Z001200.1 CDT1, ATCDT1A,... helicase auxiliary factor *(CDT1) & original... 0.09 OrthoFinder output from all 47 species
Cre03.g163300 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.03 OrthoFinder output from all 47 species
GSVIVT01024251001 CDT1, ATCDT1A, CDT1A Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.1 OrthoFinder output from all 47 species
GSVIVT01028303001 CDT1, ATCDT1A, CDT1A Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.06 OrthoFinder output from all 47 species
Gb_04601 CDT1, ATCDT1A, CDT1A helicase auxiliary factor (CDT1) 0.04 OrthoFinder output from all 47 species
LOC_Os04g10650.1 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.08 OrthoFinder output from all 47 species
LOC_Os10g34820.2 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.11 OrthoFinder output from all 47 species
Lfl_g29230 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_114779g0010 CDT1B, CDT1, ATCDT1B helicase auxiliary factor (CDT1) 0.03 OrthoFinder output from all 47 species
MA_9011g0010 CDT1, ATCDT1A, CDT1A helicase auxiliary factor (CDT1) 0.1 OrthoFinder output from all 47 species
Mp5g09070.1 CDT1, ATCDT1A, CDT1A helicase auxiliary factor (CDT1) 0.02 OrthoFinder output from all 47 species
Msp_g13606 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g25997 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000487 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original... 0.05 OrthoFinder output from all 47 species
Sam_g27532 No alias helicase auxiliary factor *(CDT1) & original description: none 0.12 OrthoFinder output from all 47 species
Smo403930 CDT1, ATCDT1A, CDT1A Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.03 OrthoFinder output from all 47 species
Solyc03g019960.3.1 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.11 OrthoFinder output from all 47 species
Solyc06g008510.3.1 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.06 OrthoFinder output from all 47 species
Zm00001e004505_P001 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.03 OrthoFinder output from all 47 species
Zm00001e006735_P001 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.02 OrthoFinder output from all 47 species
Zm00001e036500_P001 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.02 OrthoFinder output from all 47 species
Zm00001e041798_P001 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032054 Cdt1_C 640 731
IPR014939 CDT1_Gemini-bd-like 68 188
No external refs found!