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  5. Aop_g05242

Aop_g05242


Description : not classified & original description: none


Gene families : OG0001264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g05242

Target Alias Description ECC score Gene Family Method Actions
Adi_g015266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g019345 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22485 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g25729 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11718.t1 Aspi01Gene11718 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13218 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09598 No alias PIP/PIPL precursor polypeptide & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 517 565
IPR002885 Pentatricopeptide_repeat 274 323
IPR002885 Pentatricopeptide_repeat 621 663
IPR002885 Pentatricopeptide_repeat 377 425
IPR002885 Pentatricopeptide_repeat 446 495
IPR002885 Pentatricopeptide_repeat 174 202
IPR002885 Pentatricopeptide_repeat 235 267
No external refs found!