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  5. Aop_g05118

Aop_g05118


Description : E3 ubiquitin ligase *(AIRP1) & original description: none


Gene families : OG0000892 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000892_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g05118

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00263580 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00059p00175720 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT2G44370 No alias Cysteine/Histidine-rich C1 domain family protein 0.04 OrthoFinder output from all 47 species
Aop_g13834 No alias E3 ubiquitin ligase *(AIRP1) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.18G064000.1 Ceric.18G064000 E3 ubiquitin ligase *(AIRP1) & original description:... 0.03 OrthoFinder output from all 47 species
Lfl_g09590 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_18827g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_279737g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc01g109230.3.1 Solyc01g109230 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e038822_P001 Zm00001e038822 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 301 344
IPR004146 DC1 109 155
IPR004146 DC1 3 46
IPR004146 DC1 55 100
IPR004146 DC1 165 212
No external refs found!