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  5. Aop_g04901

Aop_g04901


Description : plastidial splicing factor *(PDM3) & original description: none


Gene families : OG0008153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g04901
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Ala_g05308 No alias plastidial splicing factor *(PDM3) & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g23160 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G002800.1 Ceric.01G002800 plastidial splicing factor *(PDM3) & original... 0.04 OrthoFinder output from all 47 species
Dac_g06633 No alias plastidial splicing factor *(PDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g13452 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g61630.1 LOC_Os01g61630 Pentatricopeptide repeat-containing protein At5g39980,... 0.05 OrthoFinder output from all 47 species
Ppi_g58121 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g087560.1.1 Solyc02g087560 Pentatricopeptide repeat-containing protein At5g39980,... 0.03 OrthoFinder output from all 47 species
Spa_g10723 No alias plastidial splicing factor *(PDM3) & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 510 528
IPR002885 Pentatricopeptide_repeat 400 447
IPR002885 Pentatricopeptide_repeat 332 375
IPR002885 Pentatricopeptide_repeat 259 307
IPR002885 Pentatricopeptide_repeat 193 234
IPR002885 Pentatricopeptide_repeat 537 583
No external refs found!