Aop_g02466

Description : assembly factor involved in ITS1 rRNA removal *(BRIX1) & original description: none

Gene families : OG0005675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005675_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g02466

Target	Alias	Description	ECC score	Gene Family Method
AT1G52930	No alias	Ribosomal RNA processing Brix domain protein	0.06	OrthoFinder output from all 47 species
AT3G15460	No alias	Ribosomal RNA processing Brix domain protein	0.04	OrthoFinder output from all 47 species
Adi_g045878	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001206.16	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre02.g095400	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Dac_g07263	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.04	OrthoFinder output from all 47 species
GSVIVT01028448001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Gb_30311	No alias	BRX1 assembly factor involved in ITS1 rRNA removal	0.05	OrthoFinder output from all 47 species
MA_14692g0010	No alias	BRX1 assembly factor involved in ITS1 rRNA removal	0.07	OrthoFinder output from all 47 species
Mp4g04670.1	No alias	BRX1 assembly factor involved in ITS1 rRNA removal	0.04	OrthoFinder output from all 47 species
Sam_g14955	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.02	OrthoFinder output from all 47 species
Sam_g52557	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.04	OrthoFinder output from all 47 species
Smo66840	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Solyc04g016380.3.1	Solyc04g016380	BRX1 assembly factor involved in ITS1 rRNA removal	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003883	CTP synthase activity	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007109	Brix	60	249

External Links

No external refs found!

Aop_g02466

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation