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  5. Aop_g01755

Aop_g01755


Description : not classified & original description: none


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g01755
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Azfi_s1420.g102857 No alias not classified & original description: CDS=709-1824 0.03 OrthoFinder output from all 47 species
Cba_g13479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.25G071400.1 Ceric.25G071400 not classified & original description: pacid=50593370... 0.06 OrthoFinder output from all 47 species
Ceric.31G061400.1 Ceric.31G061400 not classified & original description: pacid=50575101... 0.02 OrthoFinder output from all 47 species
Cre16.g662702 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g04880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16481 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16482 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g02255 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g40752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g090910.3.1 Solyc02g090910 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Tin_g00806 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g01889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e028338_P001 Zm00001e028338 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006474 N-terminal protein amino acid acetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018206 peptidyl-methionine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031414 N-terminal protein acetyltransferase complex IEP HCCA
CC GO:0031417 NatC complex IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 101 161
IPR000504 RRM_dom 298 355
IPR000504 RRM_dom 13 79
No external refs found!