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  5. Aop_g01355

Aop_g01355 (PRH75)


Aliases : PRH75

Description : not classified & original description: none


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g01355
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00127820 PMH2, ATRH53,... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT3G22310 PMH1, ATRH9 putative mitochondrial RNA helicase 1 0.04 OrthoFinder output from all 47 species
Aspi01Gene25330.t1 emb1138, Aspi01Gene25330 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020734.25 PMH2, ATRH53 DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.02 OrthoFinder output from all 47 species
Dac_g01008 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Pir_g05277 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Pp3c1_40060V3.1 emb1138, Pp3c1_40060 DEAD box RNA helicase (RH3) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0281.g027107 PRH75 not classified & original description: CDS=248-2341 0.03 OrthoFinder output from all 47 species
Sam_g29659 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc06g035450.4.1 PRH75, Solyc06g035450 DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia... 0.03 OrthoFinder output from all 47 species
Solyc07g044760.3.1 PMH2, ATRH53,... RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
Spa_g08414 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Tin_g13858 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0017182 peptidyl-diphthamide metabolic process IEP HCCA
BP GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018202 peptidyl-histidine modification IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1900247 regulation of cytoplasmic translational elongation IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 365 462
IPR012562 GUCT 552 649
IPR011545 DEAD/DEAH_box_helicase_dom 140 318
No external refs found!