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  4. Sequence
  5. Aop_g00769

Aop_g00769


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g00769

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00029790 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80880,... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00129420 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.02 OrthoFinder output from all 47 species
AMTR_s00119p00084460 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27800,... 0.02 OrthoFinder output from all 47 species
AMTR_s00142p00073110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g057448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g057762 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g058761 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g088109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22080 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24733 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g31957 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g54972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05820 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02658 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24502 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g78360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G098700.1 Ceric.03G098700 not classified & original description: pacid=50572397... 0.04 OrthoFinder output from all 47 species
Ceric.18G058100.1 Ceric.18G058100 not classified & original description: pacid=50622152... 0.03 OrthoFinder output from all 47 species
Ceric.24G045100.1 Ceric.24G045100 not classified & original description: pacid=50628969... 0.05 OrthoFinder output from all 47 species
Dac_g07022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g10060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21182 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08151 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02250 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g11888 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g13495 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.02 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.02 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.02 OrthoFinder output from all 47 species
LOC_Os04g55090.1 LOC_Os04g55090 Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
Len_g02855 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.04 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
MA_387336g0010 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.02 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
MA_929381g0010 OTP43 OTP43 mitochondrial RNA splicing factor 0.02 OrthoFinder output from all 47 species
MA_9740107g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 OrthoFinder output from all 47 species
Msp_g01171 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g27283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18059 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01365 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007283 No alias not classified & original description: CDS=1-1626 0.04 OrthoFinder output from all 47 species
Sam_g14954 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g19969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.02 OrthoFinder output from all 47 species
Spa_g10895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12536 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g02821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14951 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.02 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0009975 cyclase activity IEP HCCA
MF GO:0009976 tocopherol cyclase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 188 217
IPR002885 Pentatricopeptide_repeat 604 652
IPR002885 Pentatricopeptide_repeat 429 478
IPR002885 Pentatricopeptide_repeat 709 758
IPR002885 Pentatricopeptide_repeat 535 583
IPR002885 Pentatricopeptide_repeat 391 421
IPR002885 Pentatricopeptide_repeat 671 703
IPR002885 Pentatricopeptide_repeat 250 282
IPR002885 Pentatricopeptide_repeat 320 352
No external refs found!