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  5. Lfl_g08690

Lfl_g08690 (RNA_POL_II_LSRNA_POL_I...)


Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS

Description : component *(NRPB1) of RNA polymerase II complex & original description: none


Gene families : OG0003577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003577_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g08690

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00152770 RNA_POL_II_LSRNA_... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
AT4G35800 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
Dac_g01067 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Dde_g04017 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g17809 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g31167 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Gb_06029 RNA_POL_II_LSRNA_... subunit 1 of Pol II RNA polymerase 0.02 OrthoFinder output from all 47 species
Gb_33197 RNA_POL_II_LSRNA_... subunit 1 of Pol II RNA polymerase 0.03 OrthoFinder output from all 47 species
Msp_g18597 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Ore_g27265 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Pir_g10467 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Pnu_g11469 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006474 N-terminal protein amino acid acetylation IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018206 peptidyl-methionine modification IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
CC GO:0031414 N-terminal protein acetyltransferase complex IEP HCCA
CC GO:0031417 NatC complex IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 354 522
IPR007066 RNA_pol_Rpb1_3 526 689
IPR007080 RNA_pol_Rpb1_1 14 352
IPR000684 RNA_pol_II_repeat_euk 1619 1632
IPR000684 RNA_pol_II_repeat_euk 1605 1618
IPR000684 RNA_pol_II_repeat_euk 1549 1562
IPR000684 RNA_pol_II_repeat_euk 1689 1702
IPR000684 RNA_pol_II_repeat_euk 1745 1758
IPR000684 RNA_pol_II_repeat_euk 1773 1786
IPR000684 RNA_pol_II_repeat_euk 1577 1590
IPR000684 RNA_pol_II_repeat_euk 1760 1772
IPR000684 RNA_pol_II_repeat_euk 1563 1576
IPR000684 RNA_pol_II_repeat_euk 1633 1646
IPR000684 RNA_pol_II_repeat_euk 1591 1604
IPR000684 RNA_pol_II_repeat_euk 1661 1674
IPR000684 RNA_pol_II_repeat_euk 1647 1660
IPR000684 RNA_pol_II_repeat_euk 1675 1688
IPR000684 RNA_pol_II_repeat_euk 1703 1716
IPR000684 RNA_pol_II_repeat_euk 1717 1730
IPR007073 RNA_pol_Rpb1_7 1162 1295
IPR007083 RNA_pol_Rpb1_4 717 820
IPR007081 RNA_pol_Rpb1_5 827 1416
IPR007075 RNA_pol_Rpb1_6 893 1077
No external refs found!