Lfl_g08054 (AtRABG3d, RABG3d)

Aliases : AtRABG3d, RABG3d

Description : G-class RAB GTPase & original description: none

Gene families : OG0000865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000865_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g08054

Target	Alias	Description	ECC score	Gene Family Method
Adi_g052881	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.20G031900.1	ATRAB7B, RAB7B,...	G-class RAB GTPase & original description:...	0.05	OrthoFinder output from all 47 species
Dcu_g14494	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g07308	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01031953001	ATRAB7B, RAB7B,...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
LOC_Os01g12730.1	AtRABG3d,...	G-class RAB GTPase	0.04	OrthoFinder output from all 47 species
MA_18050g0020	AtRABG3d, RABG3d	Ras-related protein Rab7 OS=Gossypium hirsutum...	0.03	OrthoFinder output from all 47 species
Ore_g37374	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011168	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: CDS=38-799	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0287.g027148	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: CDS=209-802	0.03	OrthoFinder output from all 47 species
Solyc01g109520.3.1	ATRAB7B, RAB7B,...	G-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e028178_P003	ATRABG3B,...	G-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004788	thiamine diphosphokinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009229	thiamine diphosphate biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016778	diphosphotransferase activity	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0042357	thiamine diphosphate metabolic process	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	HCCA
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	10	176

External Links

No external refs found!

Lfl_g08054 (AtRABG3d, RABG3d)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation