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  5. Lfl_g07864

Lfl_g07864


Description : XRN4-exoribonuclease cofactor *(LARP1) & original description: none


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g07864

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00028940 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
AT5G21160 No alias LA RNA-binding protein 0.02 OrthoFinder output from all 47 species
Adi_g020044 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g087231 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Adi_g107381 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Als_g14335 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.06 OrthoFinder output from all 47 species
Als_g38803 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Aop_g02092 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g06975 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g13843 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g74969 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.26G066500.1 Ceric.26G066500 not classified & original description: pacid=50599632... 0.02 OrthoFinder output from all 47 species
Ceric.29G060800.1 Ceric.29G060800 not classified & original description: pacid=50624742... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000498.93 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre10.g441200 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Dcu_g05816 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g06177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07929 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g07940 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01029892001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Gb_04152 No alias La-related protein 1C OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Gb_28833 No alias XRN4-exoribonuclease cofactor (LARP1) 0.02 OrthoFinder output from all 47 species
LOC_Os09g36920.1 LOC_Os09g36920 La-related protein 1B OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g02117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_113816g0010 No alias La-related protein 1A OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_175718g0010 No alias XRN4-exoribonuclease cofactor (LARP1) 0.03 OrthoFinder output from all 47 species
Pnu_g07242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07243 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0087.g018459 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g27548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g081820.3.1 Solyc04g081820 La-related protein 1C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc06g073550.3.1 Solyc06g073550 XRN4-exoribonuclease cofactor (LARP1) 0.02 OrthoFinder output from all 47 species
Spa_g50019 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g46280 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e025537_P001 Zm00001e025537 XRN4-exoribonuclease cofactor (LARP1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 486 542
No external refs found!