MA_10426822g0020


Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectate lyase family protein


Gene families : OG_01_0000238 (Gene family) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): MA_10426822g0020
Cluster HCCA cluster: Cluster_352

Target Alias Description ECC score Gene Family Method Actions
AT1G14420 AT59 Pectate lyase family protein 0.02 Gene family
AT2G02720 No alias Pectate lyase family protein 0.02 Gene family
AT3G07010 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT4G13710 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT5G15110 No alias Pectate lyase family protein 0.02 Gene family
AT5G48900 No alias Pectin lyase-like superfamily protein 0.03 Gene family
GSVIVT01003984001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.06 Gene family
GSVIVT01011348001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01028548001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc02g093580.3.1 Solyc02g093580.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc03g071570.3.1 Solyc03g071570.3 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Solyc03g111690.3.1 Solyc03g111690.3 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc03g113150.3.1 Solyc03g113150.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc05g055510.3.1 Solyc05g055510.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc09g008380.3.1 Solyc09g008380.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc09g091430.3.1 Solyc09g091430.3 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002022 Pec_lyase 127 297
No external refs found!