AMTR_s00002p00150300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.118

Description : Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana


Gene families : OG_01_0015417 (Archaeplastida) Phylogenetic Tree(s): OG_01_0015417_tree ,
OG_02_0013831 (LandPlants) Phylogenetic Tree(s): OG_02_0013831_tree ,
OG_03_0003834 (SeedPlants) Phylogenetic Tree(s): OG_03_0003834_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00150300
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
Solyc01g088670.3.1 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.05 Archaeplastida
Solyc01g088670.3.1 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.03 LandPlants
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 SeedPlants
Solyc01g088670.3.1 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.05 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 291 340
IPR002885 Pentatricopeptide_repeat 397 445
IPR002885 Pentatricopeptide_repeat 46 92
IPR002885 Pentatricopeptide_repeat 221 268
IPR002885 Pentatricopeptide_repeat 119 145
IPR002885 Pentatricopeptide_repeat 8 39
IPR002885 Pentatricopeptide_repeat 147 179
IPR002885 Pentatricopeptide_repeat 357 382
IPR002885 Pentatricopeptide_repeat 189 219
IPR002885 Pentatricopeptide_repeat 504 525
No external refs found!