Lfl_g06900 (ATRAB1B, RABD2A,...)

Aliases : ATRAB1B, RABD2A, ATRABD2A, ARA5, RA-5, ARA-5

Description : D-class RAB GTPase & original description: none

Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g06900

Target	Alias	Description	ECC score	Gene Family Method
Ceric.03G089700.1	RAB1C, ATRAB1C,...	D-class RAB GTPase & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.39G002700.1	RAB1C, ATRAB1C,...	D-class RAB GTPase & original description:...	0.04	OrthoFinder output from all 47 species
Ehy_g22863	ATRAB1B, RABD2A,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01013868001	RAB1C, ATRAB1C, ATRABD2C	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
LOC_Os01g08450.1	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Lfl_g29131	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
MA_158684g0010	ATRAB1B, RABD2A,...	Ras-related protein RABD2a OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Pp3c10_190V3.1	ATRAB1B, RABD2A,...	RAS 5	0.01	OrthoFinder output from all 47 species
Solyc01g103370.3.1	ATFP8, RABD1,...	D-class RAB GTPase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	10	170

External Links

No external refs found!