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  5. AMTR_s00021p00241290

AMTR_s00021p00241290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.253

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.WTF1 basal splicing factor


Gene families : OG_01_0001104 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001104_tree ,
OG_02_0001147 (LandPlants) Phylogenetic Tree(s): OG_02_0001147_tree ,
OG_03_0002903 (SeedPlants) Phylogenetic Tree(s): OG_03_0002903_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00241290
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.08 Archaeplastida
AT5G62990 emb1692 Ubiquitin carboxyl-terminal hydrolase family protein 0.04 Archaeplastida
Gb_07993 No alias WTF1 plastidial RNA basal splicing factor 0.03 Archaeplastida
LOC_Os04g24710.1 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os05g49610.1 No alias WTF1 plastidial RNA basal splicing factor 0.05 Archaeplastida
MA_423098g0010 No alias WTF1 plastidial RNA basal splicing factor 0.04 Archaeplastida
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.02 Archaeplastida
Pp3c18_21300V3.1 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.05 Archaeplastida
Smo409264 No alias Protein WHATS THIS FACTOR 1 OS=Zea mays 0.03 Archaeplastida
Smo422954 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.03 Archaeplastida
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.06 LandPlants
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.02 LandPlants
LOC_Os04g24710.1 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.03 LandPlants
LOC_Os05g49610.1 No alias WTF1 plastidial RNA basal splicing factor 0.04 LandPlants
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.02 LandPlants
Pp3c18_21300V3.1 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.05 LandPlants
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.06 SeedPlants
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.02 SeedPlants
LOC_Os05g49610.1 No alias WTF1 plastidial RNA basal splicing factor 0.03 SeedPlants
MA_423098g0010 No alias WTF1 plastidial RNA basal splicing factor 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR021099 PORR_domain 87 420
No external refs found!