AMTR_s00021p00241290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.253

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.WTF1 basal splicing factor


Gene families : OG_01_0001104 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001104_tree ,
OG_02_0001147 (LandPlants) Phylogenetic Tree(s): OG_02_0001147_tree ,
OG_03_0002903 (SeedPlants) Phylogenetic Tree(s): OG_03_0002903_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00241290
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.08 Archaeplastida
AT5G62990 emb1692 Ubiquitin carboxyl-terminal hydrolase family protein 0.04 Archaeplastida
Gb_07993 No alias WTF1 plastidial RNA basal splicing factor 0.03 Archaeplastida
LOC_Os04g24710.1 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os05g49610.1 No alias WTF1 plastidial RNA basal splicing factor 0.05 Archaeplastida
MA_423098g0010 No alias WTF1 plastidial RNA basal splicing factor 0.04 Archaeplastida
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.02 Archaeplastida
Pp3c18_21300V3.1 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.05 Archaeplastida
Smo409264 No alias Protein WHATS THIS FACTOR 1 OS=Zea mays 0.03 Archaeplastida
Smo422954 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.03 Archaeplastida
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.06 LandPlants
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.02 LandPlants
LOC_Os04g24710.1 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.03 LandPlants
LOC_Os05g49610.1 No alias WTF1 plastidial RNA basal splicing factor 0.04 LandPlants
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.02 LandPlants
Pp3c18_21300V3.1 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.05 LandPlants
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.06 SeedPlants
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.02 SeedPlants
LOC_Os05g49610.1 No alias WTF1 plastidial RNA basal splicing factor 0.03 SeedPlants
MA_423098g0010 No alias WTF1 plastidial RNA basal splicing factor 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR021099 PORR_domain 87 420
No external refs found!