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  5. AMTR_s00021p00236970

AMTR_s00021p00236970 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.242

Description : Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana


Gene families : OG_01_0004773 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004773_tree ,
OG_02_0003293 (LandPlants) Phylogenetic Tree(s): OG_02_0003293_tree ,
OG_03_0001998 (SeedPlants) Phylogenetic Tree(s): OG_03_0001998_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00236970
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023159001 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.06 Archaeplastida
Gb_33747 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.03 Archaeplastida
Gb_33759 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.03 Archaeplastida
LOC_Os05g30240.1 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.03 Archaeplastida
LOC_Os11g24570.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.04 Archaeplastida
MA_118904g0010 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.09 Archaeplastida
Solyc01g103160.3.1 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.03 Archaeplastida
Solyc03g083280.4.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.06 Archaeplastida
GSVIVT01023159001 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.04 LandPlants
LOC_Os05g30240.1 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.03 LandPlants
LOC_Os11g24570.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.03 LandPlants
MA_118904g0010 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.06 LandPlants
MA_20483g0010 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.02 LandPlants
Solyc01g103160.3.1 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.03 LandPlants
Solyc03g083280.4.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.05 LandPlants
Zm00001e020614_P001 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.03 LandPlants
GSVIVT01023159001 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.04 SeedPlants
LOC_Os11g24570.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.03 SeedPlants
MA_118904g0010 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.05 SeedPlants
MA_20483g0010 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.02 SeedPlants
Solyc01g103160.3.1 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.02 SeedPlants
Solyc03g083280.4.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.05 SeedPlants
Zm00001e020614_P001 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 408 437
IPR002885 Pentatricopeptide_repeat 229 255
IPR002885 Pentatricopeptide_repeat 292 323
IPR002885 Pentatricopeptide_repeat 440 489
IPR002885 Pentatricopeptide_repeat 154 203
IPR002885 Pentatricopeptide_repeat 339 384
No external refs found!