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  5. Lfl_g06742

Lfl_g06742 (PTAC2)


Aliases : PTAC2

Description : cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2) & original description: none


Gene families : OG0008467 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008467_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Lfl_g06742

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00097240 PTAC2,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
AT1G74850 PTAC2 plastid transcriptionally active 2 0.03 OrthoFinder output from all 47 species
Adi_g067227 SVR7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g01516 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.04 OrthoFinder output from all 47 species
Azfi_s0065.g036012 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
Ceric.39G041000.1 PTAC2, Ceric.39G041000 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species
Dcu_g07096 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.06 OrthoFinder output from all 47 species
Dde_g20959 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
Ehy_g01652 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species
GSVIVT01007844001 PTAC2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
LOC_Os03g60910.1 PTAC2, LOC_Os03g60910 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
Mp7g11380.1 PTAC2 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Ore_g06175 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.12 OrthoFinder output from all 47 species
Sam_g12536 No alias cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
Smo167316 PTAC2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
Solyc03g113630.3.1 PTAC2, Solyc03g113630 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Tin_g27885 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
Zm00001e035964_P003 PTAC2, Zm00001e035964 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 560 617
IPR002885 Pentatricopeptide_repeat 384 444
IPR002885 Pentatricopeptide_repeat 243 302
IPR002885 Pentatricopeptide_repeat 314 372
IPR002885 Pentatricopeptide_repeat 679 707
IPR002885 Pentatricopeptide_repeat 193 213
IPR002885 Pentatricopeptide_repeat 465 512
No external refs found!