Description : not classified & original description: none
Gene families : OG0000031 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000031_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Lfl_g06286 | |
Cluster | HCCA: Cluster_22 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00189p00032350 | LHCB1.3, CAB140,... | Photosynthesis.photophosphorylation.photosystem... | 0.01 | OrthoFinder output from all 39 species | |
AT2G05070 | LHCB2.2, LHCB2 | photosystem II light harvesting complex gene 2.2 | 0.01 | OrthoFinder output from all 39 species | |
AT2G05100 | LHCB2.1, LHCB2 | photosystem II light harvesting complex gene 2.1 | 0.02 | OrthoFinder output from all 39 species | |
AT3G27690 | LHCB2.3, LHCB2, LHCB2.4 | photosystem II light harvesting complex gene 2.3 | 0.01 | OrthoFinder output from all 39 species | |
Aev_g22395 | No alias | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Als_g21390 | No alias | component *(LHCb1/2/3) of LHC-II complex & original... | 0.06 | OrthoFinder output from all 39 species | |
Aob_g02738 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Aob_g04833 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Aob_g07015 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Aob_g08829 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Aob_g13734 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Aob_g18768 | LHCB3*1, LHCB3 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Aop_g14660 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Aop_g16137 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Aop_g23954 | LHCB1.4, LHB1B1 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Aop_g28499 | CAB3, AB180, LHCB1.2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Aop_g69021 | CAB3, AB180, LHCB1.2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Aspi01Gene23121.t1 | LHCB2.3, LHCB2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Aspi01Gene25498.t1 | LHCB2.3, LHCB2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Aspi01Gene31128.t1 | LHCB3*1, LHCB3,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Aspi01Gene31429.t1 | LHCB3*1, LHCB3,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Aspi01Gene66566.t1 | LHCB2.2, LHCB2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Azfi_s0006.g010020 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Azfi_s0013.g013388 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Cba_g08707 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Cba_g21669 | LHCB3*1, LHCB3 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Ceric.05G101100.1 | LHCB2.3, LHCB2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Ceric.10G082300.1 | LHCB1.5, LHB1B2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.05 | OrthoFinder output from all 39 species | |
Ceric.10G082400.1 | LHCB1.5, LHB1B2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Ceric.10G082500.1 | LHCB1.4, LHB1B1,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.05 | OrthoFinder output from all 39 species | |
Ceric.10G082600.1 | LHCB1.5, LHB1B2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 39 species | |
Ceric.10G083100.1 | LHCB1.5, LHB1B2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.05 | OrthoFinder output from all 39 species | |
Ceric.10G083300.1 | LHCB1.5, LHB1B2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 39 species | |
Ceric.15G047900.1 | LHCB1.4, LHB1B1,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Ceric.17G067600.1 | LHCB2.3, LHCB2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Ceric.32G021300.1 | LHCB1.5, LHB1B2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 39 species | |
Ceric.37G024700.1 | LHCB2.3, LHCB2,... | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Dac_g05365 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 39 species | |
Dac_g23315 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 39 species | |
Dac_g29163 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Dac_g29164 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 39 species | |
Dac_g32133 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Dcu_g06028 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
GSVIVT01014439001 | LHCB3*1, LHCB3 | Photosynthesis.photophosphorylation.photosystem... | 0.01 | OrthoFinder output from all 39 species | |
Len_g05765 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 39 species | |
Len_g23886 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Len_g23888 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
MA_10431300g0010 | LHCB2.1, LHCB2 | Chlorophyll a-b binding protein type I, chloroplastic... | 0.02 | OrthoFinder output from all 39 species | |
MA_10431300g0020 | LHCB2.2, LHCB2 | component LHCb1/2/3 of LHC-II complex | 0.01 | OrthoFinder output from all 39 species | |
MA_10431300g0030 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 39 species | |
MA_131587g0010 | LHCB1.4, LHB1B1 | component LHCb1/2/3 of LHC-II complex | 0.02 | OrthoFinder output from all 39 species | |
MA_267089g0010 | LHCB2.1, LHCB2 | Chlorophyll a-b binding protein type I, chloroplastic... | 0.02 | OrthoFinder output from all 39 species | |
MA_97315g0010 | LHCB1.5, LHB1B2 | component LHCb1/2/3 of LHC-II complex | 0.01 | OrthoFinder output from all 39 species | |
Mp1g29620.1 | LHCB2.3, LHCB2, LHCB2.4 | component LHCb1/2/3 of LHC-II complex | 0.01 | OrthoFinder output from all 39 species | |
Mp7g06760.1 | LHCB2.3, LHCB2, LHCB2.4 | component LHCb1/2/3 of LHC-II complex | 0.01 | OrthoFinder output from all 39 species | |
Mp7g06770.1 | LHCB2.3, LHCB2, LHCB2.4 | component LHCb1/2/3 of LHC-II complex | 0.01 | OrthoFinder output from all 39 species | |
Mp7g06780.1 | LHCB2.3, LHCB2, LHCB2.4 | component LHCb1/2/3 of LHC-II complex | 0.01 | OrthoFinder output from all 39 species | |
Mp7g08940.1 | LHCB3*1, LHCB3 | component LHCb1/2/3 of LHC-II complex | 0.01 | OrthoFinder output from all 39 species | |
Mp7g09180.1 | LHCB2.3, LHCB2, LHCB2.4 | component LHCb1/2/3 of LHC-II complex | 0.01 | OrthoFinder output from all 39 species | |
Msp_g07998 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Msp_g16714 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 39 species | |
Msp_g22761 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 39 species | |
Msp_g25099 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 39 species | |
Msp_g26835 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Msp_g28747 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Msp_g30962 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Msp_g37594 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 39 species | |
Msp_g38912 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 39 species | |
Nbi_g05167 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 39 species | |
Nbi_g28439 | LHCB1.4, LHB1B1 | not classified & original description: none | 0.01 | OrthoFinder output from all 39 species | |
Nbi_g34825 | CAB3, AB180, LHCB1.2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Pir_g02726 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Pir_g06997 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Pir_g47176 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Pir_g52168 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Pnu_g32808 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 39 species | |
Pp3c26_6740V3.1 | LHCB2.3, LHCB2,... | photosystem II light harvesting complex gene 2.1 | 0.01 | OrthoFinder output from all 39 species | |
Sacu_v1.1_s0086.g018412 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Spa_g02789 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 39 species | |
Spa_g03449 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Spa_g21350 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.01 | OrthoFinder output from all 39 species | |
Tin_g12536 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 39 species | |
Tin_g32122 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 39 species | |
Tin_g41925 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 39 species | |
Zm00001e004940_P001 | LHCB2.3, LHCB2,... | component LHCb1/2/3 of LHC-II complex | 0.01 | OrthoFinder output from all 39 species | |
Zm00001e004941_P001 | LHCB2.3, LHCB2,... | component LHCb1/2/3 of LHC-II complex | 0.01 | OrthoFinder output from all 39 species | |
Zm00001e020627_P001 | LHCB1.5, LHB1B2,... | component LHCb1/2/3 of LHC-II complex | 0.02 | OrthoFinder output from all 39 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008483 | transaminase activity | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009522 | photosystem I | IEP | HCCA |
CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | HCCA |
MF | GO:0019842 | vitamin binding | IEP | HCCA |
MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |