1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00021p00200760

AMTR_s00021p00200760 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.168

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000395 (LandPlants) Phylogenetic Tree(s): OG_02_0000395_tree ,
OG_03_0002431 (SeedPlants) Phylogenetic Tree(s): OG_03_0002431_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00200760
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AT1G59750 ARF1 auxin response factor 1 0.03 Archaeplastida
GSVIVT01019566001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01021553001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
Gb_23186 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os01g70270.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os02g06910.1 No alias transcription factor (ARF) 0.03 Archaeplastida
MA_10121946g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10432580g0010 No alias transcription factor (ARF) 0.03 Archaeplastida
MA_85955g0010 No alias transcription factor (ARF) 0.04 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Pp3c13_4720V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Pp3c4_12970V3.1 No alias auxin response factor 16 0.02 Archaeplastida
Pp3c6_21370V3.1 No alias auxin response factor 2 0.03 Archaeplastida
Smo117217 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
Solyc08g008380.4.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc08g082630.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
AT1G59750 ARF1 auxin response factor 1 0.02 LandPlants
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.02 LandPlants
GSVIVT01019566001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 LandPlants
Gb_23186 No alias transcription factor (ARF) 0.04 LandPlants
LOC_Os01g70270.1 No alias transcription factor (ARF) 0.02 LandPlants
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.02 LandPlants
MA_10432580g0010 No alias transcription factor (ARF) 0.03 LandPlants
Solyc08g008380.4.1 No alias transcription factor (ARF) 0.02 LandPlants
Solyc08g082630.3.1 No alias transcription factor (ARF) 0.02 LandPlants
Zm00001e017798_P003 No alias transcription factor (ARF) 0.02 LandPlants
LOC_Os01g48060.1 No alias transcription factor (ARF) 0.02 SeedPlants
Zm00001e020205_P004 No alias transcription factor (ARF) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR010525 Auxin_resp 260 340
IPR003340 B3_DNA-bd 132 233
IPR003311 AUX_IAA 670 764
No external refs found!