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  5. Cre16.g656250

Cre16.g656250


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).U1-70K snRNP component


Gene families : OG_01_0004474 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004474_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g656250
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00067090 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Cpa|evm.model.tig00001333.27 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
GSVIVT01018981001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
LOC_Os10g02630.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.02 Archaeplastida
Mp1g03510.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.01 Archaeplastida
Pp3c11_26490V3.1 No alias U1 small nuclear ribonucleoprotein-70K 0.06 Archaeplastida
Pp3c7_6390V3.1 No alias U1 small nuclear ribonucleoprotein-70K 0.07 Archaeplastida
Smo154282 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Smo58751 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Solyc02g085420.4.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.04 Archaeplastida
Zm00001e012949_P002 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR022023 U1snRNP70_N 32 142
IPR000504 RRM_dom 153 221
No external refs found!