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  5. Lfl_g05562

Lfl_g05562


Description : plastidial RNA processing factor *(PPR287) & original description: none


Gene families : OG0006591 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006591_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g05562

Target Alias Description ECC score Gene Family Method Actions
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g25351 No alias plastidial RNA processing factor *(PPR287) & original... 0.04 OrthoFinder output from all 47 species
Aop_g11417 No alias plastidial RNA processing factor *(PPR287) & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0074.g037533 No alias plastidial RNA processing factor *(PPR287) & original... 0.05 OrthoFinder output from all 47 species
Ceric.05G093600.1 Ceric.05G093600 plastidial RNA processing factor *(PPR287) & original... 0.09 OrthoFinder output from all 47 species
Dcu_g13401 No alias plastidial RNA processing factor *(PPR287) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.06 OrthoFinder output from all 47 species
Gb_28778 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
LOC_Os08g09270.1 LOC_Os08g09270 plastidial RNA processing factor (PPR287) 0.03 OrthoFinder output from all 47 species
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.04 OrthoFinder output from all 47 species
Nbi_g30607 No alias plastidial RNA processing factor *(PPR287) & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017893 No alias not classified & original description: CDS=29-517 0.03 OrthoFinder output from all 47 species
Smo448320 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.04 OrthoFinder output from all 47 species
Solyc07g043600.4.1 Solyc07g043600 plastidial RNA processing factor (PPR287) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 473 501
IPR002885 Pentatricopeptide_repeat 161 189
IPR002885 Pentatricopeptide_repeat 389 447
IPR002885 Pentatricopeptide_repeat 318 376
IPR002885 Pentatricopeptide_repeat 191 240
IPR002885 Pentatricopeptide_repeat 262 306
No external refs found!