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  5. Lfl_g05426

Lfl_g05426


Description : not classified & original description: none


Gene families : OG0002889 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002889_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g05426

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00187330 evm_27.TU.AmTr_v1... Prolycopene isomerase, chloroplastic OS=Daucus carota 0.04 OrthoFinder output from all 47 species
Aev_g03316 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g49491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06469 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g07926 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g00730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08553 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g27219 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.23G052400.1 Ceric.23G052400 not classified & original description: pacid=50610225... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001258.10 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.8 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre09.g407200 No alias Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.02 OrthoFinder output from all 47 species
Cre16.g674950 No alias Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.01 OrthoFinder output from all 47 species
Dac_g12181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23383 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g10069 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g14193 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Dde_g06829 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g23170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_39488 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g21505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428345g0020 No alias Prolycopene isomerase, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10428660g0010 No alias Prolycopene isomerase 1, chloroplastic OS=Oncidium... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0052.g014061 No alias not classified & original description: CDS=115-1746 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0204.g025671 No alias not classified & original description: CDS=41-1720 0.02 OrthoFinder output from all 47 species
Sam_g07020 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo229587 No alias Prolycopene isomerase 1, chloroplastic OS=Oncidium... 0.03 OrthoFinder output from all 47 species
Solyc05g010180.4.1 Solyc05g010180 Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.02 OrthoFinder output from all 47 species
Spa_g07332 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g10638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23774 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e011669_P002 Zm00001e011669 Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004359 glutaminase activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
MF GO:0042586 peptide deformylase activity IEP HCCA
BP GO:0042816 vitamin B6 metabolic process IEP HCCA
BP GO:0042819 vitamin B6 biosynthetic process IEP HCCA
BP GO:0042822 pyridoxal phosphate metabolic process IEP HCCA
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP HCCA
BP GO:0046184 aldehyde biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 86 581
No external refs found!