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  5. Lfl_g04911

Lfl_g04911 (GUN1)


Aliases : GUN1

Description : chloroplast-to-nucleus signalling factor *(GUN) & original description: none


Gene families : OG0005860 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005860_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g04911
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00075520 GUN1,... Pentatricopeptide repeat-containing protein At2g31400,... 0.03 OrthoFinder output from all 47 species
Ala_g05835 GUN1 chloroplast-to-nucleus signalling factor *(GUN) &... 0.04 OrthoFinder output from all 47 species
Aob_g03555 GUN1 chloroplast-to-nucleus signalling factor *(GUN) &... 0.04 OrthoFinder output from all 47 species
Nbi_g02386 GUN1 chloroplast-to-nucleus signalling factor *(GUN) &... 0.03 OrthoFinder output from all 47 species
Ore_g44193 GUN1 chloroplast-to-nucleus signalling factor *(GUN) &... 0.03 OrthoFinder output from all 47 species
Sam_g25583 No alias chloroplast-to-nucleus signalling factor *(GUN) &... 0.04 OrthoFinder output from all 47 species
Zm00001e002882_P001 GUN1, Zm00001e002882 Pentatricopeptide repeat-containing protein At2g31400,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004655 porphobilinogen synthase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 457 506
IPR002885 Pentatricopeptide_repeat 528 574
IPR002885 Pentatricopeptide_repeat 637 670
IPR033443 PPR_long 286 441
IPR002885 Pentatricopeptide_repeat 250 279
No external refs found!