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  5. Lfl_g04666

Lfl_g04666


Description : LSU processome assembly factor *(NLE) & original description: none


Gene families : OG0005914 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005914_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g04666

Target Alias Description ECC score Gene Family Method Actions
Adi_g003331 No alias LSU processome assembly factor *(NLE) & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.74 No alias Notchless protein homolog OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Nbi_g18710 No alias LSU processome assembly factor *(NLE) & original... 0.02 OrthoFinder output from all 47 species
Tin_g12185 No alias LSU processome assembly factor *(NLE) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR012972 NLE 17 70
IPR001680 WD40_repeat 140 177
IPR001680 WD40_repeat 98 135
IPR001680 WD40_repeat 392 429
IPR001680 WD40_repeat 230 265
IPR001680 WD40_repeat 439 470
IPR001680 WD40_repeat 355 387
IPR001680 WD40_repeat 188 225
No external refs found!