Lfl_g04244 (TTN7, SMC3)

Aliases : TTN7, SMC3

Description : component *(SMC3/TTN7) of cohesin regulator complex & original description: none

Gene families : OG0003981 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003981_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g04244

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00198530	TTN7, SMC3,...	Cell cycle.mitosis and meiosis.sister chromatid...	0.02	OrthoFinder output from all 47 species
Adi_g076982	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Aev_g11019	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Als_g10466	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Aob_g19956	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.02	OrthoFinder output from all 47 species
Cba_g02732	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000711.46	TTN7, SMC3	Structural maintenance of chromosomes protein 3...	0.02	OrthoFinder output from all 47 species
Dcu_g09520	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01033181001	TTN7, SMC3	Cell cycle.mitosis and meiosis.sister chromatid...	0.03	OrthoFinder output from all 47 species
LOC_Os02g04050.1	TTN7, SMC3,...	component SMC3/TTN7 of cohesin regulator complex	0.03	OrthoFinder output from all 47 species
LOC_Os02g04080.1	TTN7, SMC3,...	component SMC3/TTN7 of cohesin regulator complex	0.03	OrthoFinder output from all 47 species
MA_463997g0010	TTN7, SMC3	Structural maintenance of chromosomes protein 3...	0.02	OrthoFinder output from all 47 species
Mp5g09700.1	TTN7, SMC3	component SMC3/TTN7 of cohesin regulator complex	0.03	OrthoFinder output from all 47 species
Nbi_g04455	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Ppi_g01382	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Sam_g08063	No alias	component *(SMC3/TTN7) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Spa_g10771	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.05	OrthoFinder output from all 47 species
Tin_g03549	TTN7, SMC3	component *(SMC3/TTN7) of cohesin regulator complex &...	0.03	OrthoFinder output from all 47 species
Zm00001e032592_P001	TTN7, SMC3,...	component SMC3/TTN7 of cohesin regulator complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	2	1181
IPR010935	SMC_hinge	523	633

External Links

No external refs found!

Lfl_g04244 (TTN7, SMC3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation