AMTR_s00002p00128010 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.85

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component


Gene families : OG_01_0002591 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002591_tree ,
OG_02_0002051 (LandPlants) Phylogenetic Tree(s): OG_02_0002051_tree ,
OG_03_0002085 (SeedPlants) Phylogenetic Tree(s): OG_03_0002085_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00128010
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01013850001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 Archaeplastida
GSVIVT01026137001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 Archaeplastida
Gb_18839 No alias iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.03 Archaeplastida
Mp7g14090.1 No alias iron superoxide dismutase 0.08 Archaeplastida
GSVIVT01013850001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 LandPlants
GSVIVT01026137001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 LandPlants
Gb_18839 No alias iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.02 LandPlants
Mp7g14090.1 No alias iron superoxide dismutase 0.08 LandPlants
GSVIVT01013850001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 SeedPlants
GSVIVT01026137001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 SeedPlants
Gb_18839 No alias iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IEA Interproscan
BP GO:0006801 superoxide metabolic process IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR019831 Mn/Fe_SOD_N 22 107
IPR019832 Mn/Fe_SOD_C 171 232
IPR019832 Mn/Fe_SOD_C 112 164
No external refs found!