- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : DOT4
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00001p00250660 | OTP84,... | Pentatricopeptide repeat-containing protein At3g57430,... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G77170 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g010912 | EMB2261 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g014360 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g036673 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g036743 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g075582 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g086259 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g103876 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g23915 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g16785 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g32255 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g37786 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0004.g008361 | CRR22 | not classified & original description: CDS=1-1914 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0004.g008511 | No alias | not classified & original description: CDS=1-792 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g009330 | REME1 | not classified & original description: CDS=41-1351 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g44516 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g75118 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.22G044500.1 | Ceric.22G044500 | not classified & original description: pacid=50614334... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.25G028400.1 | Ceric.25G028400 | not classified & original description: pacid=50594666... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g06366 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g02358 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g03396 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g03987 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g09819 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g21648 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g23187 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g38451 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g48923 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008965001 | No alias | Pentatricopeptide repeat-containing protein At4g18520,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01009227001 | CRR22 | Pentatricopeptide repeat-containing protein At2g22070... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01033389001 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g03339 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g33767 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g44806 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Lfl_g07418 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g18893 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g32904 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| MA_10434740g0010 | OSB1 | ssDNA-binding protein (OSB) | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g15699 | CRR22 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g20273 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g02988 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g17481 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g13050 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g12264 | OSB1 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g22621 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g22622 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g32242 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g05062 | PTAC9, OSB2 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g14613 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g61597 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17751 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo106861 | OTP82 | Pentatricopeptide repeat-containing protein At2g13600... | 0.04 | OrthoFinder output from all 47 species | |
| Smo92610 | No alias | Pentatricopeptide repeat-containing protein At5g56310... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g31801 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e029186_P001 | Zm00001e029186 | Pentatricopeptide repeat-containing protein At1g19720... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 24 | 50 |
| IPR002885 | Pentatricopeptide_repeat | 198 | 220 |
| IPR002885 | Pentatricopeptide_repeat | 402 | 426 |
| IPR002885 | Pentatricopeptide_repeat | 96 | 119 |
| IPR002885 | Pentatricopeptide_repeat | 122 | 169 |
| IPR002885 | Pentatricopeptide_repeat | 326 | 372 |
| IPR002885 | Pentatricopeptide_repeat | 427 | 468 |
| IPR002885 | Pentatricopeptide_repeat | 224 | 271 |
| No external refs found! |