Description : not classified & original description: none
Gene families : OG0002960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002960_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Ala_g35642 | |
Cluster | HCCA: Cluster_92 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00065p00122030 | evm_27.TU.AmTr_v1... | Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
AT2G25320 | No alias | TRAF-like family protein | 0.09 | OrthoFinder output from all 47 species | |
Adi_g098468 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g107387 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aev_g05545 | No alias | not classified & original description: none | 0.1 | OrthoFinder output from all 47 species | |
Als_g18903 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Als_g22455 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aop_g36780 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene31458.t1 | Aspi01Gene31458 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ceric.02G028800.1 | Ceric.02G028800 | not classified & original description: pacid=50585664... | 0.13 | OrthoFinder output from all 47 species | |
Ceric.07G070900.1 | Ceric.07G070900 | not classified & original description: pacid=50626059... | 0.08 | OrthoFinder output from all 47 species | |
Dcu_g12067 | No alias | not classified & original description: none | 0.13 | OrthoFinder output from all 47 species | |
GSVIVT01015601001 | No alias | Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01035878001 | No alias | Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana | 0.1 | OrthoFinder output from all 47 species | |
MA_10430470g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
MA_10432878g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
MA_24634g0010 | No alias | Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
MA_9624g0010 | No alias | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
Mp8g09710.1 | No alias | MATH domain and coiled-coil domain-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g29897 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
Pnu_g22486 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g30269 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pp3c2_25330V3.1 | Pp3c2_25330 | TRAF-like family protein | 0.01 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0066.g016184 | No alias | not classified & original description: CDS=189-5282 | 0.05 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0159.g023847 | No alias | not classified & original description: CDS=1-5244 | 0.05 | OrthoFinder output from all 47 species | |
Sam_g11589 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Smo173767 | No alias | Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana | 0.08 | OrthoFinder output from all 47 species | |
Solyc06g017970.4.1 | Solyc06g017970 | Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... | 0.1 | OrthoFinder output from all 47 species | |
Spa_g37203 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e022965_P001 | Zm00001e022965 | Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... | 0.1 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
CC | GO:0016592 | mediator complex | IEP | HCCA |
MF | GO:0017069 | snRNA binding | IEP | HCCA |
MF | GO:0017070 | U6 snRNA binding | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No external refs found! |