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  5. Lfl_g03493

Lfl_g03493 (RAD50, ATRAD50)


Aliases : RAD50, ATRAD50

Description : component *(RAD50) of DNA resection MRE11-RAD50-NBS1 (MRN) complex & original description: none


Gene families : OG0005654 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005654_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g03493

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00258230 RAD50, ATRAD50,... DNA damage response.DNA repair mechanisms.homologous... 0.04 OrthoFinder output from all 47 species
AT2G31970 RAD50, ATRAD50 DNA repair-recombination protein (RAD50) 0.1 OrthoFinder output from all 47 species
Aob_g12355 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Ceric.14G029200.1 RAD50, ATRAD50,... component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Ceric.1Z239700.1 RAD50, ATRAD50,... component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.06 OrthoFinder output from all 47 species
Dcu_g08986 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.04 OrthoFinder output from all 47 species
Ehy_g20387 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.02 OrthoFinder output from all 47 species
Gb_12673 RAD50, ATRAD50 component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.03 OrthoFinder output from all 47 species
LOC_Os02g29464.1 RAD50, ATRAD50,... component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.04 OrthoFinder output from all 47 species
MA_10429947g0010 RAD50, ATRAD50 component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.02 OrthoFinder output from all 47 species
Mp5g04390.1 RAD50, ATRAD50 component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.02 OrthoFinder output from all 47 species
Nbi_g01485 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.04 OrthoFinder output from all 47 species
Ore_g15138 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Ppi_g05944 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.09 OrthoFinder output from all 47 species
Sam_g37184 No alias component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.02 OrthoFinder output from all 47 species
Smo405818 RAD50, ATRAD50 DNA damage response.DNA repair mechanisms.homologous... 0.05 OrthoFinder output from all 47 species
Solyc05g053800.3.1 RAD50, ATRAD50,... component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.07 OrthoFinder output from all 47 species
Zm00001e022614_P001 RAD50, ATRAD50,... component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0140664 ATP-dependent DNA damage sensor activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR013134 Zn_hook_RAD50 683 721
IPR038729 Rad50/SbcC_AAA 7 248
No external refs found!