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  5. Lfl_g03168

Lfl_g03168


Description : GARP subgroup HHO transcription factor & original description: none


Gene families : OG0001052 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g03168
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT2G03500 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g019107 No alias GARP subgroup HHO transcription factor & original... 0.06 OrthoFinder output from all 47 species
Adi_g030747 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Adi_g059187 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene06100.t1 Aspi01Gene06100 GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene06858.t1 Aspi01Gene06858 GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene11418.t1 Aspi01Gene11418 GARP subgroup HHO transcription factor & original... 0.06 OrthoFinder output from all 47 species
Cba_g22464 No alias GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g25602 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.21G045700.1 Ceric.21G045700 GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g03915 No alias GARP subgroup HHO transcription factor & original... 0.08 OrthoFinder output from all 47 species
LOC_Os03g55590.1 LOC_Os03g55590 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species
Lfl_g40586 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Msp_g25323 No alias GARP subgroup HHO transcription factor & original... 0.07 OrthoFinder output from all 47 species
Nbi_g04274 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g29341 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g37435 No alias GARP subgroup HHO transcription factor & original... 0.06 OrthoFinder output from all 47 species
Smo402040 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Tin_g11367 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 264 315
No external refs found!