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  5. Lfl_g03055

Lfl_g03055 (ATO)


Aliases : ATO

Description : component *(SF3A3) of splicing factor 3A complex & original description: none


Gene families : OG0005469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g03055

Target Alias Description ECC score Gene Family Method Actions
Aob_g07243 ATO component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Ceric.22G050500.1 ATO, Ceric.22G050500 component *(SF3A3) of splicing factor 3A complex &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000912.17 ATO RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre06.g297750 ATO RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
LOC_Os03g50850.1 ATO, LOC_Os03g50850 component SF3A3 of splicing factor 3A complex 0.03 OrthoFinder output from all 47 species
Mp4g20400.1 ATO component SF3A3 of splicing factor 3A complex 0.03 OrthoFinder output from all 47 species
Pir_g06064 ATO component *(SF3A3) of splicing factor 3A complex &... 0.04 OrthoFinder output from all 47 species
Ppi_g14896 ATO component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Solyc03g083430.3.1 ATO, Solyc03g083430 component SF3A3 of splicing factor 3A complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
CC GO:0005681 spliceosomal complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR024598 SF3a60/Prp9_C 407 526
IPR021966 SF3a60_bindingd 80 106
IPR031774 SF3A3_dom 129 177
No external refs found!