Ala_g30318 (ATRABE1D, ATRAB8C,...)

Aliases : ATRABE1D, ATRAB8C, RAB-E1D, ATRAB-E1D, RAB8C

Description : E-class RAB GTPase & original description: none

Gene families : OG0000945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g30318

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00168p00058210	evm_27.TU.AmTr_v1...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Ceric.28G011900.1	ATRABE1D,...	E-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000983.30	ATRABE1C,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Cre15.g641800	ATRABE1D,...	GTP-binding protein yptV2 OS=Volvox carteri	0.03	OrthoFinder output from all 47 species
Ehy_g09631	No alias	E-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os07g13530.1	LOC_Os07g13530	E-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Msp_g05932	ATRABE1D,...	E-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g04662	ATRABE1D,...	E-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010582	ATRABE1C,...	not classified & original description: CDS=1-537	0.03	OrthoFinder output from all 47 species
Zm00001e033170_P001	ATRABE1C,...	E-class RAB GTPase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016073	snRNA metabolic process	IEP	HCCA
BP	GO:0016180	snRNA processing	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034472	snRNA 3'-end processing	IEP	HCCA
BP	GO:0034477	U6 snRNA 3'-end processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	40	201

External Links

No external refs found!