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  5. Ala_g28240

Ala_g28240 (SHP2, AGL5)


Aliases : SHP2, AGL5

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g28240
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AT2G14210 ANR1, AGL44 AGAMOUS-like 44 0.02 OrthoFinder output from all 47 species
AT2G22540 SVP, AGL22 K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT4G24540 AGL24 AGAMOUS-like 24 0.04 OrthoFinder output from all 47 species
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g061705 AGL14 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g49663 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50829 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene15809.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19457.t1 AGL16, Aspi01Gene19457 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54037.t3 Aspi01Gene54037 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007710 AGL6 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0704.g082655 SHP2, AGL5 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g32938 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ceric.38G021500.1 AGL2, SEP1,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.39G001800.1 AGL104, Ceric.39G001800 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g09236 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25870 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48421 AGL21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003864001 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
GSVIVT01008560001 SOC1, AGL20, ATSOC1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01012249001 AGL2, SEP1 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01025945001 STK, AGL11 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01038474001 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
Gb_03068 AGL16 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Gb_03806 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_03807 AGL16 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Gb_19178 AGL6 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os06g11970.1 AGL66, LOC_Os06g11970 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g22760.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Len_g10100 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16827 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25148 AGL10, CAL1, CAL not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37644 AGL21 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_10289256g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_126898g0010 AGL71 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_19296g0010 AGL9, SEP3 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_333471g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_5917g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_6544g0010 STK, AGL11 Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.02 OrthoFinder output from all 47 species
MA_9841429g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Nbi_g20682 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42767 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g48804 AGL8, FUL regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 OrthoFinder output from all 47 species
Pnu_g22178 AGL66 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07434 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17601 AGL21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006239 SHP2, AGL5 not classified & original description: CDS=497-1018 0.02 OrthoFinder output from all 47 species
Sam_g06712 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo121275 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Spa_g02544 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g31312 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018993_P001 AGL62, Zm00001e018993 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Zm00001e036159_P001 AGL24, Zm00001e036159 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 69 111
No external refs found!